PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01005g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25828.5 Da    PI: 8.6857
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01005g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.92.6e-131551743
                              HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                    SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                              s r+  + kR + ++KKAeE S+LC+++vaviif ++
  Peinf101Scf01005g00003.1 15 SVRNSILNKRAASLFKKAEEFSILCGVKVAVIIFNPR 51
                              55666689*************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.344151IPR002100Transcription factor, MADS-box
SMARTSM004328.3E-10160IPR002100Transcription factor, MADS-box
CDDcd002665.48E-15284No hitNo description
SuperFamilySSF554554.84E-16394IPR002100Transcription factor, MADS-box
PfamPF003192.2E-131351IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTRRSLKHTR NCSESVRNSI LNKRAASLFK KAEEFSILCG VKVAVIIFNP REVEPIAWPS  60
YDQAKDIITS YLIFSETERL KKLVRHETYL LKKVNAQEEN IIKIEKMNEE KEMELLFNQL  120
VEGKNINELD ARQLKGLLKL SAVKMAKLAE RKKQLNQQNH PNTNPANDNE SVANQSDGLH  180
NVMPSASLME DLINDSWFFE SMIDNHNDLG FESGSGTKLA PTANRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593028.15e-98PREDICTED: MADS-box transcription factor 22-like
RefseqXP_016506481.15e-98PREDICTED: MADS-box protein AGL71-like
TrEMBLM1DAJ05e-70M1DAJ0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000859051e-69(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-17M-type_MADS family protein